Quick Start

1

Create Account

Register for a free account or login to access your dashboard

Register Now
2

Choose Your Method

Download Desktop App

Full control over the software and real-time analysis

Download v0.3.0
3

View Results

After analysis completes, explore your results in the interactive dashboard

About MMonitor

MMonitor is an open-source software platform for the real-time analysis and visualization of metagenomic Oxford Nanopore Technologies (ONT) sequencing data. It provides a desktop application for running bioinformatics pipelines and a web-based dashboard for interactive result inspection, including taxonomic composition over time, quality scores, diversity indices, and taxonomy-metadata correlations.

For comprehensive documentation, detailed methodology, and validation results, please refer to our official publication and GitHub repository.

Lucas, T. N., Biehain, U., Gautam, A., et al.
MMonitor for Real-Time Monitoring of Microbial Communities Using Long Reads.
Cell Reports Methods (Elsevier, 2025)
DOI: https://doi.org/10.1016/j.crmeth.2025.101266

Please cite this paper if you use MMonitor in your research.

GitHub Repository

Access the source code, contribute, and find detailed documentation on our GitHub repository.

Visit GitHub Repository

Dashboard Applications

Explore your metagenomic data through our interactive dashboard applications, each designed for specific analysis tasks:

QC

Overview of common quality metrics of the input data

QC Dashboard Preview
Click to enlarge

Taxonomy

Analyze the taxonomic composition of metagenome samples

Taxonomy Dashboard Preview
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Diversity

Overview of diversity metrics, including alpha and beta diversity, PCoA plots and rarefaction curves

Diversity Dashboard Preview
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Correlations

Correlate metagenomic data with external metadata to highlight important variables

Correlations Dashboard Preview
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MAGs

Analyze MAGs with genome visualization and annotations

MAGs Dashboard Preview
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Horizon

Visualize taxonomic abundance changes over time with interactive horizon charts

Horizon Dashboard Preview
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Installation and Documentation

For installation instructions and detailed documentation, please visit our GitHub repository.